This is the old version of this workshop.
This workshop is best done using RStudio and R on your laptop. We recommend you create a new project to contain the files. Alternatively you can use RStudio Cloud over the web (Monash users can log in with their Monash google account).
Optionally, also download and install IGV on your computer.
Once you’ve created a new project in RStudio, running the R code below will download files and install packages used in this workshop.
# Download data download.file( "https://monashdatafluency.github.io/r-bioc/r-bioc-files.zip", destfile="r-bioc-files.zip") unzip("r-bioc-files.zip") # Install BiocManager package from CRAN: install.packages("BiocManager") # Install some Bioconductor packages: BiocManager::install(c( "Biostrings", "BSgenome", "GenomicRanges", "GenomicFeatures", "ensembldb", "rtracklayer", "seqLogo", "AnnotationHub" ), INSTALL_opts="--no-byte-compile")
The above code will download and unzip the files for this workshop. You can also download them from: